PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Itr_sc002683.1_g00007.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
Family ERF
Protein Properties Length: 225aa    MW: 24267.1 Da    PI: 9.807
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Itr_sc002683.1_g00007.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP264.42.4e-202575256
                      AP2  2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56
                             +y+GVr ++ +gr++AeIrdp    k+ r++lg+f+taeeAa+a++aa+++++g+
  Itr_sc002683.1_g00007.1 25 HYRGVRKRP-WGRYAAEIRDPA---KKSRVWLGTFDTAEEAARAYDAAAREFRGA 75
                             6********.**********83...36*************************985 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF541712.75E-222582IPR016177DNA-binding domain
PfamPF008478.8E-142574IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.105.0E-322582IPR001471AP2/ERF domain
SMARTSM003801.3E-372588IPR001471AP2/ERF domain
CDDcd000184.45E-182581No hitNo description
PROSITE profilePS5103223.8022582IPR001471AP2/ERF domain
PRINTSPR003671.4E-112637IPR001471AP2/ERF domain
PRINTSPR003671.4E-114864IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 225 aa     Download sequence    Send to blast
MAVKGREEGG VKGGAGKVNG IKEVHYRGVR KRPWGRYAAE IRDPAKKSRV WLGTFDTAEE  60
AARAYDAAAR EFRGAKAKTN FHSPSENHSP SQSSTVESSG SETTGHAPQF PLELDLTRRL  120
GSAEAAGVRS VNNNNNTFQF FHPQPAVAVL PNGQPVLLFE TLWRPGAVSR PLPDQFEAAP  180
AIPSKRPALS DSSTFSVVEE NHFVGAGVAE KRLNLDLNLA PPTEA
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A5e-212581259ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
2gcc_A6e-212281262ATERF1
3gcc_A6e-212281262ATERF1
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009772525.11e-80PREDICTED: ethylene-responsive transcription factor 4
SwissprotQ9LW492e-82ERF4_NICSY; Ethylene-responsive transcription factor 4
TrEMBLE7FKW04e-80E7FKW0_TOBAC; Ethylene response factor 3b
STRINGPGSC0003DMT4000689592e-74(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA21241165
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G44210.12e-22erf domain protein 9